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Software developed as part of various scientific projects:
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PHP script to compensate aCGH copy number calls in tumors where glandular tissue was initially used as a reference. Genomic regions which show somatic copy number alterations in the glandular tissue are adjusted to reflect actual copy number status in the tumors.  82k v. 1 Jun 10, 2015, 10:17 AM Piotr Madanecki
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  Jan 3, 2018, 3:15 AM Piotr Madanecki
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HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. In the latter case the first row of the data set should be designated as header row and should contain the names of the corresponding columns. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2  Jan 3, 2018, 3:12 AM Piotr Madanecki
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  Jan 3, 2018, 3:17 AM Piotr Madanecki